The goal of SiPhyNetwork is to generate Phylogenetic networks in a process-based manner. SiPhyNetwork considers a birth-death-hybridization proccess for simulating Networks. We allow for hybridization to be lineage generative, lineage degenerative, and lineage neutral.
You can install the development version from GitHub with:
# install.packages("devtools")
devtools::install_github("jjustison/SiPhyNetwork")See the Rmarkdown labelled Introduction.rmd in the vignette folder to see how to use the package